{ "_id": "6a12c1a9acfb0bcc41d1df61", "Package": "spduration", "Title": "Split-Population Duration (Cure) Regression", "Version": "0.17.3.9000", "Authors@R": "c(\nperson(\"Andreas\", \"Beger\", , \"adbeger@gmail.com\", c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1883-3169\")),\nperson(\"Daina\", \"Chiba\", , \"dchiba@essex.ac.uk\", \"aut\", comment = c(ORCID = \"0000-0002-9208-4373\")),\nperson(\"Daniel W.\", \"Hill, Jr.\", , \"dwhill@uga.edu\", \"aut\"),\nperson(\"Nils W.\", \"Metternich\", , \"n.metternich@ucl.ac.uk\", \"aut\", comment = c(ORCID = \"0000-0001-8757-0409\")),\nperson(\"Shahryar\", \"Minhas\", , \"hermes829@gmail.com\", \"aut\"),\nperson(\"Michael D.\", \"Ward\", , \"michael.don.ward@gmail.com\", c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-6561-6186\"))\n)", "Description": "An implementation of split-population duration regression\nmodels. Unlike regular duration models, split-population\nduration models are mixture models that accommodate the\npresence of a sub-population that is not at risk for failure,\ne.g. cancer patients who have been cured by treatment. This\npackage implements Weibull and Loglogistic forms for the\nduration component, and focuses on data with time-varying\ncovariates. These models were originally formulated in Boag\n(1949) and Berkson and Gage (1952), and extended in Schmidt and\nWitte (1989).", "Encoding": "UTF-8", "License": "GPL-3", "LazyData": "true", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "URL": "https://github.com/andybega/spduration,\nhttps://www.andybeger.com/spduration/,\nhttp://www.andybeger.com/spduration/", "BugReports": "https://github.com/andybega/spduration/issues", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev", "Repository": "https://andybega.r-universe.dev", "Date/Publication": "2025-07-28 10:18:16 UTC", "RemoteUrl": "https://github.com/andybega/spduration", "RemoteRef": "HEAD", "RemoteSha": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-24 09:07:52 UTC", "User": "root" }, "Author": "Andreas Beger [aut, cre] (ORCID:\n),\nDaina Chiba [aut] (ORCID: ),\nDaniel W. Hill, Jr. [aut],\nNils W. Metternich [aut] (ORCID:\n),\nShahryar Minhas [aut],\nMichael D. Ward [aut, cph] (ORCID:\n)", "Maintainer": "Andreas Beger ", "MD5sum": "43221a1b61e5c6a6492637b1745d0e09", "_user": "andybega", "_type": "src", "_file": "spduration_0.17.3.9000.tar.gz", "_fileid": "68665f15fd47239573afb21e2c00dccc40f89d41bf0699683902cd6868a8574f", "_filesize": 734428, "_sha256": "68665f15fd47239573afb21e2c00dccc40f89d41bf0699683902cd6868a8574f", "_created": "2026-05-24T09:07:52.000Z", "_published": "2026-05-24T09:15:21.184Z", "_distro": "noble", "_jobs": [ { "job": 77585923483, "time": 180, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7183922799" }, { "job": 77585923498, "time": 210, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7183925773" }, { "job": 77585923510, "time": 183, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183922957" }, { "job": 77585923471, "time": 198, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183924657" }, { "job": 77585923518, "time": 193, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7183920471" }, { "job": 77585923514, "time": 376, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7183939462" }, { "job": 77585923508, "time": 199, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7183921473" }, { "job": 77585923517, "time": 382, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7183939633" }, { "job": 77585644586, "time": 291, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183903616" }, { "job": 77585923473, "time": 165, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183921273" }, { "job": 77585923482, "time": 192, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7183923995" }, { "job": 77585923478, "time": 182, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7183922973" }, { "job": 77585923487, "time": 169, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7183921671" } ], "_buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/andybega/spduration", "_commit": { "id": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "author": "Andreas Beger ", "committer": "Andreas Beger ", "message": "increment dev version\n", "time": 1753697896 }, "_maintainer": { "name": "Andreas Beger", "email": "adbeger@gmail.com", "login": "andybega", "bluesky": "@andybeger.bsky.social", "orcid": "0000-0003-1883-3169", "description": "Data Scientist", "uuid": 1353756 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.2", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "corpcor", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "forecast", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.11.0", "role": "Imports" }, { "package": "separationplot", "role": "Imports" }, { "package": "xtable", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" } ], "_owner": "andybega", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 3 }, { "week": "2025-31", "n": 5 } ], "_tags": [ { "name": "v0.17.3", "date": "2025-07-28" } ], "_topics": [ "mixture-model", "regression", "split-population", "survival-analysis", "cpp" ], "_stars": 4, "_contributors": [ { "user": "andybega", "count": 171, "uuid": 1353756 }, { "user": "cassyld", "count": 8, "uuid": 1364446 }, { "user": "dainachiba", "count": 6, "uuid": 1934230 }, { "user": "nilswmetternich", "count": 3, "uuid": 1375467 } ], "_userbio": { "uuid": 1353756, "type": "user", "name": "Andreas Beger", "description": "Data Scientist" }, "_downloads": { "count": 238, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spduration" }, "_devurl": "https://github.com/andybega/spduration", "_pkgdown": "https://www.andybeger.com/spduration/", "_searchresults": 40, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/spduration.html", "manual.pdf" ], "_homeurl": "https://github.com/andybega/spduration", "_realowner": "andybega", "_cranurl": true, "_releases": [ { "version": "0.13.1", "date": "2015-07-09" }, { "version": "0.14.0", "date": "2015-10-27" }, { "version": "0.15.0", "date": "2016-03-01" }, { "version": "0.15.1", "date": "2016-05-12" }, { "version": "0.16.0", "date": "2017-04-11" }, { "version": "0.17.0", "date": "2017-10-04" }, { "version": "0.17.1", "date": "2018-05-04" }, { "version": "0.17.2", "date": "2024-02-08" }, { "version": "0.17.3", "date": "2025-08-01" } ], "_exports": [ "add_duration", "panel_lag", "plot_hazard", "plot_hazard1", "plot_hazard2", "sepplot", "spdur" ], "_datasets": [ { "name": "bscoup", "title": "B&S 2003 coup data", "object": "bscoup", "class": [ "data.frame" ], "fields": [ "countryid", "year", "couprisk", "recentcoups", "rwar", "milreg", "wealth", "instab", "coup", "africa", "eurnam", "samerica", "camerica", "regconf" ], "rows": 5463, "table": true, "tojson": true }, { "name": "coups", "title": "Global coups, 1979 to 2010", "object": "coups", "class": [ "data.frame" ], "fields": [ "gwcode", "year", "coup1", "succ.coup", "democ", "autoc", "polity", "polity2", "regtrans" ], "rows": 5828, "table": true, "tojson": true }, { "name": "model.coups", "title": "Model of global coups from 1979 to 2010", "object": "model.coups", "class": [ "spdur" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "accessors", "title": "Accessor methods for spdur Objects", "topics": [ "accessors", "coef.spdur", "logLik.spdur", "model.matrix.spdur", "nobs.spdur", "terms.spdur", "vcov.spdur" ] }, { "page": "add_duration", "title": "Add duration variables to panel data", "topics": [ "add_duration" ] }, { "page": "AIC.spdur", "title": "AIC method for spdur", "topics": [ "AIC.spdur" ] }, { "page": "as.data.frame.spdur", "title": "Convert spdur results to summary data frame", "topics": [ "as.data.frame.spdur" ] }, { "page": "BIC.spdur", "title": "BIC method for spdur", "topics": [ "BIC.spdur" ] }, { "page": "bscoup", "title": "B&S 2003 coup data", "topics": [ "bscoup" ] }, { "page": "coups", "title": "Global coups, 1979 to 2010", "topics": [ "coups" ] }, { "page": "forecast.spdur", "title": "Forecast from a spdur model", "topics": [ "forecast.spdur" ] }, { "page": "model.coups", "title": "Model of global coups from 1979 to 2010", "topics": [ "model.coups" ] }, { "page": "panel_lag", "title": "Lag panel data", "topics": [ "panel_lag" ] }, { "page": "plot_hazard", "title": "Plot hazard function", "topics": [ "plot_hazard" ] }, { "page": "plot_hazard1", "title": "Plot conditional hazard rate", "topics": [ "plot_hazard1" ] }, { "page": "plot_hazard2", "title": "Simulate and plot hazard function", "topics": [ "plot_hazard2" ] }, { "page": "plot.spdur", "title": "Plot split-duration model results.", "topics": [ "plot.spdur" ] }, { "page": "predict.spdur", "title": "Predict methods for spdur Objects", "topics": [ "fitted.spdur", "predict.spdur", "residuals.spdur" ] }, { "page": "print.summary.spdur", "title": "Print a split-population duration model results summary", "topics": [ "print.summary.spdur" ] }, { "page": "sepplot", "title": "Generate a Separation Plot", "topics": [ "sepplot" ] }, { "page": "spdur", "title": "Split-population duration (cure) regression", "topics": [ "spdur" ] }, { "page": "spduration", "title": "Split-Population Duration (Cure) Regression Models", "topics": [ "spduration-package", "spduration" ] }, { "page": "summary.spdur", "title": "Summarize split-population duration results", "topics": [ "summary.spdur" ] }, { "page": "xtable.spdur", "title": "Create export table for a split-duration model", "topics": [ "xtable.spdur" ] } ], "_pkglogo": "https://github.com/andybega/spduration/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/andybega/spduration/raw/HEAD/README.md", "_rundeps": [ "backports", "base64enc", "bslib", "cachem", "checkmate", "cli", "cluster", "colorspace", "corpcor", "cpp11", "data.table", "digest", "evaluate", "farver", "fastmap", "fontawesome", "forecast", "foreign", "Formula", "fracdiff", "fs", "generics", "ggplot2", "glue", "gridExtra", "gtable", "highr", "Hmisc", "htmlTable", "htmltools", "htmlwidgets", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "lmtest", "magrittr", "MASS", "memoise", "mime", "nlme", "nnet", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "rmarkdown", "rpart", "rstudioapi", "S7", "sass", "scales", "separationplot", "stringi", "stringr", "timeDate", "tinytex", "urca", "vctrs", "viridisLite", "withr", "xfun", "xtable", "yaml", "zoo" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "introduction.Rmd", "filename": "introduction.html", "title": "Splitting it Up: The spduration Split-population Duration Regression Package", "author": "Andreas Beger, Daniel W. Hill, Jr., Nils W. Metternich, Shahryar Minhas, and Michael D. Ward", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Immune populations and inference of duration processes", "Model development", "Fit a split-population model on coups data", "Out-of-sample testing", "Additional discussion", "Censoring considerations", "Alternative packages", "Conclusion", "References" ], "created": "2017-04-06 12:04:13", "modified": "2025-07-28 09:19:28", "commits": 8 } ], "_score": 5.681241237375588, "_indexed": true, "_nocasepkg": "spduration", "_universes": [ "andybega" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.17.3.9000", "date": "2026-05-24T09:10:36.000Z", "distro": "noble", "arch": "aarch64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "ed021b744e9777651bf261049358b5f4abf9e9210fc6ea204b357ff43d294d2e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.7.0", "os": "linux", "version": "0.17.3.9000", "date": "2026-05-24T09:10:58.000Z", "distro": "noble", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "e01f33ec997db5a0aa7491b1cd789819a8becf5773bfcb9ff80cc2cff8cab7fd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.6.0", "os": "linux", "version": "0.17.3.9000", "date": "2026-05-24T09:10:39.000Z", "distro": "noble", "arch": "aarch64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "f135829dfcc4d3a0d432e4aa291c79b32e054690669f175342f26e4417c7c699", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.6.0", "os": "linux", "version": "0.17.3.9000", "date": "2026-05-24T09:10:50.000Z", "distro": "noble", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "a1dee07cb24f7646b9d46fcb3e1c3fa457a65909a988f5414b9109b7883476dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.5.3", "os": "mac", "version": "0.17.3.9000", "date": "2026-05-24T09:10:29.000Z", "arch": "aarch64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "095398d46ac421e60a0197b50add402e8f7dcee6d334765e7f7c00b797703d61", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.5.3", "os": "mac", "version": "0.17.3.9000", "date": "2026-05-24T09:12:57.000Z", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "28c0635f651ceff941c512fa270bb085591d62f01821f053b207f11b763ec434", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.6.0", "os": "mac", "version": "0.17.3.9000", "date": "2026-05-24T09:10:30.000Z", "arch": "aarch64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "2f89e3408b8a9bc80621d225f4e1ff7a4c6a541d36ad8fdb047cf84699502ac2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.6.0", "os": "mac", "version": "0.17.3.9000", "date": "2026-05-24T09:12:34.000Z", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "a34cb117d54a9b0e02f666f6b0220c8f8ea56433af315ea83e62055a380ecd62", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.6.0", "os": "wasm", "version": "0.17.3.9000", "date": "2026-05-24T09:10:56.000Z", "arch": "emscripten", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "8c11da91065e0215a0e205b4100e88d80d5d2a382e1182502dacd15d6eac604c", "status": "success", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.7.0", "os": "win", "version": "0.17.3.9000", "date": "2026-05-24T09:09:37.000Z", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "404ba0f9bc302393d74d03e0e8e5a780a681192a931be418b7aa91e67761efb5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.5.3", "os": "win", "version": "0.17.3.9000", "date": "2026-05-24T09:09:31.000Z", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "b570bf5c1ced2281f0b11ae6b49788bc725c36878b4bec1e8345c68b76849b5c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" }, { "r": "4.6.0", "os": "win", "version": "0.17.3.9000", "date": "2026-05-24T09:09:28.000Z", "arch": "x86_64", "commit": "c4baf0ab9791a569c09c19fbb347b937e0a9d1ed", "fileid": "c8ba6ed9727b080029389ed074b93adf4cd2bb2405906e6ef40c52f88fd685d6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/andybega/actions/runs/26357063514" } ] }